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BSD domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822080, updated on 18-Sep-2024

Summary

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Official Full Name
BSD domain-containing protein
Primary source
TAIR:AT3G24820
Locus tag
AT3G24820
See related
Araport:AT3G24820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (9062354..9064476, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene proteolysis 1 Neighboring gene Cyclin-dependent kinase inhibitor family protein Neighboring gene Ribosomal protein L13 family protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_113394.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
BSD domain-containing protein
NP_566755.1
  • BSD domain-containing protein; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 175 Blast hits to 175 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9062354..9064476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113394.3 → NP_566755.1  BSD domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566755.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VIQ6, A0A384KPK5, Q9LRX9
    Conserved Domains (1) summary
    smart00751
    Location:89 → 137
    BSD; domain in transcription factors and synapse-associated proteins
Nucleotide Protein
Heading Accession and Version

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