RSY3 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Symbol: RSY3
Official Full Name: Adenine nucleotide alpha hydrolases-like superfamily protein
Primary source: TAIR:AT3G24560
Locus tag: AT3G24560
See related: Araport:AT3G24560
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: RASPBERRY 3
Summary: novel gene involved in embryogenesis
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See RSY3 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 10

Sequence:: Chromosome: 3; NC_003074.8 (8963770..8966616)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

NM_001338693.1

Supported by ESTs:

NM_113367.3

Supported by ESTs:

NM_202628.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ligase activity, forming carbon-nitrogen bonds	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chloroplast organization	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within embryo development ending in seed dormancy	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within suspensor development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast	ISS Inferred from Sequence or Structural Similarity more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: Adenine nucleotide alpha hydrolases-like superfamily protein

NP_001319632.1

RASPBERRY 3 (RSY3); CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_566753.1

RASPBERRY 3 (RSY3); CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 1377 Blast hits to 1377 proteins in 336 species: Archae - 0; Bacteria - 610; Metazoa - 2; Fungi - 15; Plants - 23; Viruses - 0; Other Eukaryotes - 727 (source: NCBI BLink).

NP_974357.1

RASPBERRY 3 (RSY3); FUNCTIONS IN: nucleotide binding, ligase activity, forming carbon-nitrogen bonds, ATP binding; INVOLVED IN: chloroplast organization, suspensor development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lysidine-tRNA(Ile) synthetase, N-terminal (InterPro:IPR012795), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PP-loop (InterPro:IPR011063); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

8963770..8966616

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_113367.3 → NP_566753.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566753.1

Status: REVIEWED

UniProtKB/TrEMBL

Q94BN3

Conserved Domains (2) summary

COG0037
Location:8 → 187

TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]

cl00292
Location:8 → 93

AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
NM_202628.2 → NP_974357.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974357.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2ESS0, F4J7P7

Conserved Domains (2) summary

COG0037
Location:86 → 385

TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]

pfam01171
Location:86 → 291

ATP_bind_3; PP-loop family
NM_001338693.1 → NP_001319632.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

B4F7Q5, Q3EB11