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SYP32 syntaxin of plants 32 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822024, updated on 18-Sep-2024

Summary

Official Symbol
SYP32
Official Full Name
syntaxin of plants 32
Primary source
TAIR:AT3G24350
Locus tag
AT3G24350
See related
Araport:AT3G24350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSYP32; syntaxin of plants 32; syntaxin of plants 32
Summary
member of Glycoside Hydrolase Family 17
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Genomic context

See SYP32 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (8837542..8839702)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene chromatin remodeling 40 Neighboring gene ncRNA Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene pseudo Neighboring gene pseudo

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001203032.1
NM_113342.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables SNAP receptor activity TAS
Traceable Author Statement
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within intracellular protein transport TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within membrane fusion TAS
Traceable Author Statement
more info
PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
PubMed 

General protein information

Preferred Names
syntaxin of plants 32
NP_001189961.1
  • syntaxin of plants 32 (SYP32); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 31 (TAIR:AT5G05760.1).
NP_189078.2
  • syntaxin of plants 32 (SYP32); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 31 (TAIR:AT5G05760.1); Has 1379 Blast hits to 1377 proteins in 233 species: Archae - 0; Bacteria - 12; Metazoa - 543; Fungi - 411; Plants - 204; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8837542..8839702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113342.4NP_189078.2  syntaxin of plants 32 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189078.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK09
    UniProtKB/TrEMBL
    A0A178VCU6, A0A5S9XFR0, A0A654FAG2
    Conserved Domains (1) summary
    cd15844
    Location:258342
    SNARE_syntaxin5; SNARE motif of syntaxin 5
  2. NM_001203032.1NP_001189961.1  syntaxin of plants 32 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189961.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FAG2, F4J6K6
    Conserved Domains (1) summary
    cd15844
    Location:272356
    SNARE_syntaxin5; SNARE motif of syntaxin 5