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paired amphipathic helix Sin3-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822014, updated on 18-Sep-2024

Summary

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Official Full Name
paired amphipathic helix Sin3-like protein
Primary source
TAIR:AT3G24260
Locus tag
AT3G24260
See related
Araport:AT3G24260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (8793837..8794961, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glycine-rich protein Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein Neighboring gene pumilio 25 Neighboring gene small acidic protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
paired amphipathic helix Sin3-like protein
NP_189069.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28870.1); Has 220 Blast hits to 218 proteins in 65 species: Archae - 7; Bacteria - 6; Metazoa - 43; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8793837..8794961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113332.1 → NP_189069.1  paired amphipathic helix Sin3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189069.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XFQ0, A0A654FAF1, Q9LK19
    Conserved Domains (2) summary
    smart00761
    Location:210 → 299
    HDAC_interact; Histone deacetylase (HDAC) interacting
    cl04955
    Location:75 → 152
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins
Nucleotide Protein
Heading Accession and Version

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