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Calcium-binding EF-hand family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821997, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-binding EF-hand family protein
Primary source
TAIR:AT3G24110
Locus tag
AT3G24110
See related
Araport:AT3G24110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (8704208..8705550, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene putative glucosamine-fructose-6-phosphate aminotransferase Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene Uncharacterized protein family SERF Neighboring gene Homeodomain-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001338668.1
NM_113316.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Calcium-binding EF-hand family protein
NP_001319629.1
  • Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G26470.1); Has 7639 Blast hits to 6370 proteins in 881 species: Archae - 1; Bacteria - 23; Metazoa - 3335; Fungi - 878; Plants - 2363; Viruses - 0; Other Eukaryotes - 1039 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8704208..8705550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338668.1 → NP_001319629.1  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEN7, A0A2H1ZEJ6
    Conserved Domains (3) summary
    cd00051
    Location:61 → 121
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd15897
    Location:60 → 89
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:60 → 213
    EFh_PEF; The penta-EF hand (PEF) family

  2. NM_113316.2 → NP_189053.1  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189053.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LRN6
    UniProtKB/TrEMBL
    A0A178VEN7, A0A5S9XF47, A0A654FA68
    Conserved Domains (3) summary
    cd00051
    Location:58 → 118
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd15897
    Location:57 → 86
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:57 → 210
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LRN6.1

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