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reverse transcriptase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821974, updated on 18-Sep-2024

Summary

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Official Full Name
reverse transcriptase-like protein
Primary source
TAIR:AT3G23910
Locus tag
AT3G23910
See related
Araport:AT3G23910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Sequence:
Chromosome: 3; NC_003074.8 (8636331..8639580, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene topoisomerase II Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene beta-amylase 1 Neighboring gene troponin T, skeletal protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function. Luhua S, et al. Plant Physiol, 2008 Sep. PMID 18614705, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_113296.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
reverse transcriptase-like protein
NP_189033.1
  • BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8636331..8639580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338663.1 → NP_001327189.1  reverse transcriptase-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRJ4

  2. NM_113296.5 → NP_189033.1  reverse transcriptase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189033.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XGN3, P92952
Nucleotide Protein
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Gene LinkOut

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