U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HXXXD-type acyl-transferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821967, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
HXXXD-type acyl-transferase family protein
Primary source
TAIR:AT3G23840
Locus tag
AT3G23840
See related
Araport:AT3G23840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CER26-LIKE
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (8610979..8612742)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UDP-D-glucuronate 4-epimerase 6 Neighboring gene glycine-rich RNA-binding protein 4 Neighboring gene GTP-binding protein-like protein Neighboring gene magnesium transporter NIPA (DUF803) Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Xanthomonas natriuretic peptide is recognized by the Arabidopsis natriuretic peptide receptor 1 and through this interaction triggers similar plant responses to its plant counterpart. Di Paolo V, et al. Plant Sci, 2023 Jan. PMID 36240911
  2. ECERIFERUM2-LIKE proteins have unique biochemical and physiological functions in very-long-chain fatty acid elongation. Haslam TM, et al. Plant Physiol, 2015 Mar. PMID 25596184, Free PMC Article
  3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  4. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data shows that CER2-LIKEs paired with condensing enzymes are required for fertilization. [CER2-LIKE2]
    Title: ECERIFERUM2-LIKE proteins have unique biochemical and physiological functions in very-long-chain fatty acid elongation.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_113289.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within pollen development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within very long-chain fatty acid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
HXXXD-type acyl-transferase family protein
NP_566741.1
  • HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G13840.1); Has 1547 Blast hits to 1547 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 7; Plants - 1538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8610979..8612742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113289.3 → NP_566741.1  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566741.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LIS1
    UniProtKB/TrEMBL
    Q8LAF8
    Conserved Domains (1) summary
    cl23789
    Location:35 → 269
    PLN02481; Omega-hydroxypalmitate O-feruloyl transferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LIS1.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools