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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821880, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT3G23060
Locus tag
AT3G23060
See related
Araport:AT3G23060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (8200636..8203335)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene indole-3-acetic acid 7 Neighboring gene CRM family member 3A Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of AtBMI1C, a polycomb group protein gene, accelerates flowering in Arabidopsis. Li W, et al. PLoS One, 2011. PMID 21701597, Free PMC Article
  2. Regulation of the new Arabidopsis imprinted gene AtBMI1C requires the interplay of different epigenetic mechanisms. Bratzel F, et al. Mol Plant, 2012 Jan. PMID 21914649
  3. The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development. Merini W, et al. Plant Physiol, 2017 Jan. PMID 27837089, Free PMC Article
  4. The repressive role of Arabidopsis H2A.Z in transcriptional regulation depends on AtBMI1 activity. Gómez-Zambrano Á, et al. Nat Commun, 2019 Jun 27. PMID 31249301, Free PMC Article
  5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. H2A.Z can be monoubiquitinated by the PRC1 components AtBMI1A/B/C.
    Title: The repressive role of Arabidopsis H2A.Z in transcriptional regulation depends on AtBMI1 activity.
  2. BMI1c expression and role in the plant development
    Title: The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development.
  3. AtBMI1C is an imprinted gene expressed from the maternal allele in the endosperm but biallelically expressed in stamen. It was found that the characteristic expression pattern of AtBMI1C is the result of a complex epigenetic regulation that involves CG DNA methylation, RNA-directed non-CG DNA methylation (RdDM), and PcG activity. [BMI1C]
    Title: Regulation of the new Arabidopsis imprinted gene AtBMI1C requires the interplay of different epigenetic mechanisms.
  4. Results suggest that AtBMI1C participates in flowering time control by regulating the expression of FLC
    Title: Overexpression of AtBMI1C, a polycomb group protein gene, accelerates flowering in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001338611.1
NM_113206.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_188946.2
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: central cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 1905 Blast hits to 1881 proteins in 164 species: Archae - 0; Bacteria - 4; Metazoa - 1370; Fungi - 69; Plants - 271; Viruses - 4; Other Eukaryotes - 187 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8200636..8203335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113206.5 → NP_188946.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188946.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LS86
    UniProtKB/TrEMBL
    A0A178VJ20, A0A5S9XES4
    Conserved Domains (3) summary
    cd00162
    Location:16 → 56
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cd17087
    Location:364 → 467
    RAWUL_DRIP_like; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in DREB2A-interacting protein (DRIP) and similar proteins
    cl17238
    Location:14 → 57
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. NM_001338611.1 → NP_001327765.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTB6, A0A5S9XES4, A0A654FBR9
    Conserved Domains (2) summary
    cl17238
    Location:14 → 57
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl28922
    Location:367 → 464
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LS86.1

Gene LinkOut

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