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CLL1 allergen-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821853, updated on 18-Sep-2024

Summary

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Official Symbol
CLL1
Official Full Name
allergen-like protein
Primary source
TAIR:AT3G22820
Locus tag
AT3G22820
See related
Araport:AT3G22820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CHALLAH-LIKE 1; EPFL5; epidermal patterning factor like 5
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Genomic context

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See CLL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (8073258..8074178, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene auxin canalization protein (DUF828) Neighboring gene heat shock transcription factor A6B Neighboring gene Chlorophyll A-B binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An EPFL peptide signaling pathway promotes stamen elongation via enhancing filament cell proliferation to ensure successful self-pollination in Arabidopsis thaliana. He Y, et al. New Phytol, 2023 May. PMID 36772858
  2. Epidermal cell density is autoregulated via a secretory peptide, EPIDERMAL PATTERNING FACTOR 2 in Arabidopsis leaves. Hara K, et al. Plant Cell Physiol, 2009 Jun. PMID 19435754
  3. The EPFL-ERf-SERK signaling controls integument development in Arabidopsis. Li M, et al. New Phytol, 2023 Apr. PMID 36564978
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113181.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in guard cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in plant ovule development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in stamen filament development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in stomatal complex development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
allergen-like protein
NP_188921.1
  • allergen-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14723.1); Has 245 Blast hits to 245 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8073258..8074178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113181.4 → NP_188921.1  allergen-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188921.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LUH9
    UniProtKB/TrEMBL
    A0A178VHB6, A0A5S9XES1
    Conserved Domains (1) summary
    pfam17181
    Location:57 → 107
    EPF; Epidermal patterning factor proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LUH9.1

Gene LinkOut

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Molecular Biology Databases
Research Materials