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RPS10 ribosomal protein S10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821799, updated on 18-Sep-2024

Summary

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Official Symbol
RPS10
Official Full Name
ribosomal protein S10
Primary source
TAIR:AT3G22300
Locus tag
AT3G22300
See related
Araport:AT3G22300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ribosomal protein S10
Summary
Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10
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Genomic context

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See RPS10 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (7885637..7886876)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Topoisomerase II-associated protein PAT1 Neighboring gene jasmonate ZIM-domain protein Neighboring gene Endoplasmic reticulum vesicle transporter protein Neighboring gene putative mitochondrial RNA helicase 1 Neighboring gene Eukaryotic rpb5 RNA polymerase subunit family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria. Kwasniak-Owczarek M, et al. Nucleic Acids Res, 2019 Dec 16. PMID 31732734, Free PMC Article
  2. Silencing of the nuclear RPS10 gene encoding mitochondrial ribosomal protein alters translation in arabidopsis mitochondria. Kwasniak M, et al. Plant Cell, 2013 May. PMID 23723321, Free PMC Article
  3. Developmentally early and late onset of Rps10 silencing in Arabidopsis thaliana: genetic and environmental regulation. Majewski P, et al. J Exp Bot, 2009. PMID 19174455, Free PMC Article
  4. Transfer of rps10 from the mitochondrion to the nucleus in Arabidopsis thaliana: evidence for RNA-mediated transfer and exon shuffling at the integration site. Wischmann C, et al. FEBS Lett, 1995 Oct 30. PMID 7589523
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Splicing is considerably less effective in the mutant, indicating an unexpected link between the deficiency of S10 and mitochondrial splicing. Thus, a shortage of the mitoribosomal S10 protein has wide-ranging consequences on mitochondrial gene expression.
    Title: Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria.
  2. Data indicate that silencing of the nuclear RPS10 gene encoding mitochondrial ribosomal protein S10 disturbs the ratio between the small and large subunits of mitoribosomes, with an excess of the latter.
    Title: Silencing of the nuclear RPS10 gene encoding mitochondrial ribosomal protein alters translation in arabidopsis mitochondria.
  3. Transgene dosage, silencing competence of the transgene loci, and photoperiod conditions were found to regulate the onset and efficiency of Rps10 silencing in two independent transgenic lines of Arabidopsis thaliana.
    Title: Developmentally early and late onset of Rps10 silencing in Arabidopsis thaliana: genetic and environmental regulation.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_113128.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within translation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
part_of mitochondrial small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ribosomal protein S10
NP_188869.1
  • ribosomal protein S10 (RPS10); CONTAINS InterPro DOMAIN/s: Ribosomal protein S10 subgroup (InterPro:IPR005731), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 1 (TAIR:AT3G22310.1); Has 2936 Blast hits to 2936 proteins in 744 species: Archae - 0; Bacteria - 1485; Metazoa - 4; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 1328 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7885637..7886876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113128.3 → NP_188869.1  ribosomal protein S10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188869.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P42797, Q9LUW7
    UniProtKB/TrEMBL
    A0A178V7J4, A0A5S9XEK4, Q8LG25
    Conserved Domains (1) summary
    cl00314
    Location:154 → 190
    Ribosomal_S10; Ribosomal protein S10p/S20e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42797.2

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