U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

IQD5 IQ-domain 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821783, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
IQD5
Official Full Name
IQ-domain 5
Primary source
TAIR:AT3G22190
Locus tag
AT3G22190
See related
Araport:AT3G22190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
IQ-domain 5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See IQD5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (7830905..7834135, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene far-red elongated hypocotyls 3 Neighboring gene DHHC-type zinc finger family protein Neighboring gene uncharacterized protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene hAT transposon superfamily

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Microtubule-associated protein IQ67 DOMAIN5 regulates morphogenesis of leaf pavement cells in Arabidopsis thaliana. Mitra D, et al. J Exp Bot, 2019 Jan 7. PMID 30407556, Free PMC Article
  2. The Microtubule-Associated Protein IQ67 DOMAIN5 Modulates Microtubule Dynamics and Pavement Cell Shape. Liang H, et al. Plant Physiol, 2018 Aug. PMID 29976837, Free PMC Article
  3. The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus. Bürstenbinder K, et al. Plant Physiol, 2017 Mar. PMID 28115582, Free PMC Article
  4. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  5. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. links calcium signaling to developmental processes that regulate anisotropic growth in pavement cells
    Title: Microtubule-associated protein IQ67 DOMAIN5 regulates morphogenesis of leaf pavement cells in Arabidopsis thaliana.
  2. IQD5 is a microtubele-associated protein and it regulates microtubules dynamics that affect microtubule organization and subsequent cell shape formation.
    Title: The Microtubule-Associated Protein IQ67 DOMAIN5 Modulates Microtubule Dynamics and Pavement Cell Shape.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001203017.2
NM_001338571.1
NM_001338572.1
NM_113116.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in anisotropic cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular signal transduction IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in leaf pavement cell development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in microtubule-based process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein localization to cortical microtubule cytoskeleton IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of cellulose biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of microtubule cytoskeleton organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cortical microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in phragmoplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in preprophase band IDA
Inferred from Direct Assay
more info
 PubMed 
located_in spindle microtubule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
IQ-domain 5
NP_001189946.1
  • IQ-domain 5 (IQD5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 6 (TAIR:AT2G26180.1).
NP_001319617.1
  • IQ-domain 5 (IQD5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 6 (TAIR:AT2G26180.1); Has 890 Blast hits to 885 proteins in 49 species: Archae - 0; Bacteria - 4; Metazoa - 33; Fungi - 8; Plants - 826; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7830905..7834135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203017.2 → NP_001189946.1  IQ-domain 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189946.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VHN2, F4J061, Q9LIE3
    UniProtKB/TrEMBL
    A0A384K8F3, A0A7G2EMK6
    Conserved Domains (1) summary
    smart00015
    Location:86 → 108
    IQ; Calmodulin-binding motif

  2. NM_001338571.1 → NP_001319617.1  IQ-domain 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VHN2, F4J061, Q9LIE3
    UniProtKB/TrEMBL
    A0A384K8F3, A0A7G2EMK6
    Conserved Domains (1) summary
    smart00015
    Location:86 → 108
    IQ; Calmodulin-binding motif

  3. NM_001338572.1 → NP_001325926.1  IQ-domain 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VHN2, F4J061, Q9LIE3
    UniProtKB/TrEMBL
    A0A384K8F3, A0A7G2EMK6
    Conserved Domains (1) summary
    smart00015
    Location:86 → 108
    IQ; Calmodulin-binding motif

  4. NM_113116.4 → NP_188858.4  IQ-domain 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188858.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VHN2, F4J061, Q9LIE3
    UniProtKB/TrEMBL
    A0A384K8F3, A0A7G2EMK6
    Conserved Domains (1) summary
    smart00015
    Location:86 → 108
    IQ; Calmodulin-binding motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J061.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools