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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821725, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT3G21710
Locus tag
AT3G21710
See related
Araport:AT3G21710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
VASCULAR-RELATED UNKNOWN PROTEIN 1; VUP1
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (7648316..7649894)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene Ras-related small GTP-binding family protein Neighboring gene isocitrate lyase Neighboring gene Dihydroneopterin aldolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling. Grienenberger E, et al. Plant Physiol, 2014 Apr. PMID 24567189, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. These data suggest a conserved role for VUP1 in regulating secondary wall formation during vascular development by tissue- or cell-specific modulation of hormone signaling pathways.[VUP1]
    Title: Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling.
Submit: New GeneRIF Correction

General gene information

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NM_113066.3
NM_202621.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within xylem development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_188808.2
  • unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974350.1
  • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7648316..7649894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113066.3 → NP_188808.2  uncharacterized protein AT3G21710 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188808.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6D7

  2. NM_202621.3 → NP_974350.1  uncharacterized protein AT3G21710 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974350.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GRY6, Q9LSZ3
    UniProtKB/TrEMBL
    A0A7G2EMH2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSZ3.1

Gene LinkOut

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