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dentin sialophosphoprotein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821683, updated on 18-Sep-2024

Summary

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Official Full Name
dentin sialophosphoprotein-like protein
Primary source
TAIR:AT3G21290
Locus tag
AT3G21290
See related
Araport:AT3G21290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXL8.16
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Sequence:
Chromosome: 3; NC_003074.8 (7482106..7488935)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene DOF zinc finger protein 2 Neighboring gene ubiquitin carboxyl-terminal hydrolase Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene RNA methyltransferase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Intrinsically Disordered Protein CARP9 Bridges HYL1 to AGO1 in the Nucleus to Promote MicroRNA Activity. Tomassi AH, et al. Plant Physiol, 2020 Sep. PMID 32636339, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001338522.1
NM_113024.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables miRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
dentin sialophosphoprotein-like protein
NP_566681.1
  • dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Occludin/RNA polymerase II elongation factor, ELL domain (InterPro:IPR010844); Has 17175 Blast hits to 8691 proteins in 788 species: Archae - 88; Bacteria - 6651; Metazoa - 4182; Fungi - 1520; Plants - 456; Viruses - 109; Other Eukaryotes - 4169 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7482106..7488935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113024.3 → NP_566681.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566681.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VB76, A0A384KH30, F4IXI9, Q94BS1
    Conserved Domains (1) summary
    pfam07303
    Location:1088 → 1187
    Occludin_ELL; Occludin homology domain

  2. NM_001338522.1 → NP_001326781.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQB8, Q94BS1
Nucleotide Protein
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