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UBP7 ubiquitin carboxyl-terminal hydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821682, updated on 18-Sep-2024

Summary

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Official Symbol
UBP7
Official Full Name
ubiquitin carboxyl-terminal hydrolase
Primary source
TAIR:AT3G21280
Locus tag
AT3G21280
See related
Araport:AT3G21280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ubiquitin-specific protease 7
Summary
Encodes a ubiquitin-specific protease.
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Genomic context

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See UBP7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Sequence:
Chromosome: 3; NC_003074.8 (7477930..7482125, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene DOF zinc finger protein 2 Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene RNA methyltransferase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001338521.1
NM_113023.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase
NP_566680.2
  • ubiquitin-specific protease 7 (UBP7); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 6 (TAIR:AT1G51710.1); Has 4498 Blast hits to 4321 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 2376; Fungi - 767; Plants - 642; Viruses - 2; Other Eukaryotes - 711 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7477930..7482125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113023.4 → NP_566680.2  ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566680.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VLU8, A0A5S9XFT1
    Conserved Domains (2) summary
    cd02657
    Location:160 → 526
    Peptidase_C19A; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl ...
    cd16104
    Location:56 → 130
    Ubl_USP14_like; ubiquitin-like (Ubl) domain found in ubiquitin carboxyl-terminal hydrolase 14 (USP14) and similar proteins

  2. NM_001338521.1 → NP_001325430.1  ubiquitin carboxyl-terminal hydrolase, partial [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IXI8, Q84WC6, Q9FPT3, Q9LU31
    UniProtKB/TrEMBL
    A0A1I9LL79, A0A7G2EK69
Nucleotide Protein
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