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SVL3 SHV3-like 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821598, updated on 18-Sep-2024

Summary

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Official Symbol
SVL3
Official Full Name
SHV3-like 3
Primary source
TAIR:AT3G20520
Locus tag
AT3G20520
See related
Araport:AT3G20520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
GDPDL5; Glycerophosphodiester phosphodiesterase (GDPD) like 5; SHV3-like 3
Summary
Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.
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Genomic context

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See SVL3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (7162766..7165864)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene purple acid phosphatase 18 Neighboring gene Transmembrane proteins 14C Neighboring gene Protein kinase superfamily protein Neighboring gene polymerase gamma 1 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_112944.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
SHV3-like 3
NP_188688.1
  • SHV3-like 3 (SVL3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterase family protein (TAIR:AT4G26690.1); Has 1100 Blast hits to 834 proteins in 287 species: Archae - 0; Bacteria - 734; Metazoa - 17; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7162766..7165864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112944.3 → NP_188688.1  SHV3-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188688.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JEQ1, Q84W64
    UniProtKB/TrEMBL
    A0A178VJN0, A0A5S9XFK6, A0A654FEE1
    Conserved Domains (2) summary
    cd08603
    Location:33 → 319
    GDPD_SHV3_repeat_1; Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
    cd08604
    Location:337 → 644
    GDPD_SHV3_repeat_2; Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JEQ1.1

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