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BTB/POZ domain protein, putative (DUF177) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821518, updated on 18-Sep-2024

Summary

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Official Full Name
BTB/POZ domain protein, putative (DUF177)
Primary source
TAIR:AT3G19810
Locus tag
AT3G19810
See related
Araport:AT3G19810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (6877575..6879543, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene E3 ubiquitin-protein ligase, putative (DUF177) Neighboring gene cell elongation protein / DWARF1 / DIMINUTO (DIM) Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene ncRNA Neighboring gene pre-mRNA-processing protein 40C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Essential role of conserved DUF177A protein in plastid 23S rRNA accumulation and plant embryogenesis. Yang J, et al. J Exp Bot, 2016 Oct. PMID 27574185, Free PMC Article
  2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338419.1
NM_112871.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within rRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
BTB/POZ domain protein, putative (DUF177)
NP_566649.1
  • Protein of unknown function (DUF177); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF177 (InterPro:IPR003772); Has 677 Blast hits to 677 proteins in 297 species: Archae - 0; Bacteria - 566; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6877575..6879543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112871.4 → NP_566649.1  BTB/POZ domain protein, putative (DUF177) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566649.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LT27
    UniProtKB/TrEMBL
    A0A5S9XEC4, A0A654F8V2
    Conserved Domains (1) summary
    pfam02620
    Location:171 → 310
    DUF177; Uncharacterized ACR, COG1399

  2. NM_001338419.1 → NP_001327235.1  BTB/POZ domain protein, putative (DUF177) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LT27
    UniProtKB/TrEMBL
    A0A5S9XEC4, A0A654F8V2
    Conserved Domains (1) summary
    pfam02620
    Location:171 → 310
    DUF177; Uncharacterized ACR, COG1399
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LT27.1

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