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aminopeptidase (DUF3754) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821468, updated on 18-Sep-2024

Summary

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Official Full Name
aminopeptidase (DUF3754)
Primary source
TAIR:AT3G19340
Locus tag
AT3G19340
See related
Araport:AT3G19340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (6701273..6704312, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene miscRNA Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene maternally expressed pab C-terminal Neighboring gene Zinc finger (CCCH-type) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_112821.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
aminopeptidase (DUF3754)
NP_188565.1
  • LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3754 (InterPro:IPR022227); BEST Arabidopsis thaliana protein match is: aminopeptidases (TAIR:AT5G13940.1); Has 308 Blast hits to 303 proteins in 113 species: Archae - 0; Bacteria - 164; Metazoa - 10; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6701273..6704312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112821.5 → NP_188565.1  aminopeptidase (DUF3754) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188565.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VM20, A0A654F8Q2, Q8RWC3
    Conserved Domains (1) summary
    pfam12576
    Location:261 → 381
    DUF3754; Protein of unknown function (DUF3754)
Nucleotide Protein
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