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transmembrane protein, putative (DUF677) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821467, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF677)
Primary source
TAIR:AT3G19330
Locus tag
AT3G19330
See related
Araport:AT3G19330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (6699267..6701300)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene miscRNA Neighboring gene aminopeptidase (DUF3754) Neighboring gene maternally expressed pab C-terminal Neighboring gene Zinc finger (CCCH-type) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001338392.1
NM_112820.3
NM_202610.2
NM_202611.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF677)
NP_188564.2
  • Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19250.1); Has 131 Blast hits to 131 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974339.1
  • Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974340.1
  • Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6699267..6701300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112820.3 → NP_188564.2  transmembrane protein, putative (DUF677) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188564.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3DN90, Q3E7M1, Q3EB43, Q9LT84
    UniProtKB/TrEMBL
    A0A178VJJ7, A0A178VK32
    Conserved Domains (1) summary
    cl21731
    Location:108 → 372
    DUF677; Protein of unknown function (DUF677)

  2. NM_202610.2 → NP_974339.1  transmembrane protein, putative (DUF677) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974339.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VK32
    Conserved Domains (1) summary
    cl21731
    Location:254 → 340
    DUF677; Protein of unknown function (DUF677)

  3. NM_202611.1 → NP_974340.1  transmembrane protein, putative (DUF677) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974340.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FE04
    Conserved Domains (1) summary
    cl21731
    Location:254 → 340
    DUF677; Protein of unknown function (DUF677)

  4. NM_001338392.1 → NP_001326660.1  transmembrane protein, putative (DUF677) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3DN90, Q3E7M1, Q3EB43, Q9LT84
    UniProtKB/TrEMBL
    A0A178VJJ7, A0A178VK32
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LT84.2

Gene LinkOut

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