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PIF / Ping-Pong family of plant transposase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821446, updated on 18-Sep-2024

Summary

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Official Full Name
PIF / Ping-Pong family of plant transposase
Primary source
TAIR:AT3G19120
Locus tag
AT3G19120
See related
Araport:AT3G19120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (6609350..6611138, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding protein Neighboring gene Protein kinase superfamily protein Neighboring gene RNA-binding protein 47B Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_112799.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
PIF / Ping-Pong family of plant transposase
NP_566626.1
  • PIF / Ping-Pong family of plant transposases; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 644 Blast hits to 642 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 49; Plants - 189; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6609350..6611138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112799.4 → NP_566626.1  PIF / Ping-Pong family of plant transposase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566626.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAQ1, A0A5S9XDS6, Q9LJL8
    Conserved Domains (1) summary
    cl21562
    Location:228 → 392
    DDE_Tnp_4; DDE superfamily endonuclease
Nucleotide Protein
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