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MEF20 mitochondrial editing factor 20 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821430, updated on 18-Sep-2024

Summary

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Official Symbol
MEF20
Official Full Name
mitochondrial editing factor 20
Primary source
TAIR:AT3G18970
Locus tag
AT3G18970
See related
Araport:AT3G18970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
mitochondrial editing factor 20; mitochondrial editing factor 20
Summary
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
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Genomic context

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See MEF20 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (6543318..6545432, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-Tyr Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene EIN2 targeting protein1 Neighboring gene AP2/B3-like transcriptional factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. Takenaka M, et al. J Biol Chem, 2010 Aug 27. PMID 20566637, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_112783.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within mitochondrial mRNA modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mitochondrial editing factor 20
NP_188527.2
  • mitochondrial editing factor 20 (MEF20); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G59200.1); Has 30354 Blast hits to 12990 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 18; Plants - 30011; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6543318..6545432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112783.2 → NP_188527.2  mitochondrial editing factor 20 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188527.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LJ69
    UniProtKB/TrEMBL
    A0A178VB66, A0A5S9XDI9, A0A654F8J7
    Conserved Domains (2) summary
    PLN03077
    Location:127 → 472
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:290 → 317
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LJ69.1

Gene LinkOut

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