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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821425, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT3G18930
Locus tag
AT3G18930
See related
Araport:AT3G18930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT3G18920
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (6523379..6526044, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/associated interaction domain protein Neighboring gene EIN2 targeting protein2 Neighboring gene uncharacterized protein Neighboring gene clast3-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome analysis of peroxisomes from dark-treated senescent Arabidopsis leaves. Pan R, et al. J Integr Plant Biol, 2018 Nov. PMID 29877633
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_112779.5
NM_202607.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in vesicle IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_188523.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 8769 Blast hits to 8742 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2146; Fungi - 644; Plants - 4854; Viruses - 63; Other Eukaryotes - 1062 (source: NCBI BLink).
NP_974336.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6523379..6526044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338371.1 → NP_001327213.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67YI6, Q9LJ73
    UniProtKB/TrEMBL
    A0A178VLB0, A0A5S9XDQ9
    Conserved Domains (1) summary
    cd16454
    Location:155 → 198
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family

  2. NM_112779.5 → NP_188523.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188523.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67YI6, Q9LJ73
    UniProtKB/TrEMBL
    A0A178VLB0, A0A5S9XDQ9
    Conserved Domains (1) summary
    cd16454
    Location:155 → 198
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family

  3. NM_202607.2 → NP_974336.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974336.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67YI6, Q9LJ73
    UniProtKB/TrEMBL
    A0A178VLB0, A0A5S9XDQ9
    Conserved Domains (1) summary
    cd16454
    Location:155 → 198
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67YI6.2

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