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Autophagy-related protein 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821408, updated on 18-Sep-2024

Summary

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Official Full Name
Autophagy-related protein 13
Primary source
TAIR:AT3G18770
Locus tag
AT3G18770
See related
Araport:AT3G18770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (6459816..6463101, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene with no lysine (K) kinase 6 Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis. Suttangkakul A, et al. Plant Cell, 2011 Oct. PMID 21984698, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The ATG1/13 complex in Arabidopsis thaliana is both a regulator and a target of autophagy.
    Title: The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_112763.5

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Autophagy-related protein 13
NP_188507.1
  • Autophagy-related protein 13; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G49590.1); Has 480 Blast hits to 395 proteins in 141 species: Archae - 0; Bacteria - 18; Metazoa - 72; Fungi - 154; Plants - 106; Viruses - 7; Other Eukaryotes - 123 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6459816..6463101 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112763.5 → NP_188507.1  Autophagy-related protein 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188507.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J8V5, Q0WQ00, Q9LSA0
    UniProtKB/TrEMBL
    A0A178VAK8, A0A5S9XDF5
    Conserved Domains (1) summary
    pfam10033
    Location:22 → 259
    ATG13; Autophagy-related protein 13
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J8V5.1

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