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DUF1639 family protein, putative (DUF1639) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821358, updated on 18-Sep-2024

Summary

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Official Full Name
DUF1639 family protein, putative (DUF1639)
Primary source
TAIR:AT3G18295
Locus tag
AT3G18295
See related
Araport:AT3G18295
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (6281204..6282306)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene zinc finger protein-like protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene TATA box-binding protein associated factor RNA polymerase I subunit C Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112714.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DUF1639 family protein, putative (DUF1639)
NP_188458.1
  • Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G48770.1); Has 259 Blast hits to 258 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6281204..6282306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112714.3 → NP_188458.1  DUF1639 family protein, putative (DUF1639) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188458.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VG27, A0A5S9XDF9, A0A654F9N8, Q9LS61
    Conserved Domains (1) summary
    pfam07797
    Location:158 → 208
    DUF1639; Protein of unknown function (DUF1639)
Nucleotide Protein
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