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MYB4R1 myb domain protein 4r1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821335, updated on 18-Sep-2024

Summary

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Official Symbol
MYB4R1
Official Full Name
myb domain protein 4r1
Primary source
TAIR:AT3G18100
Locus tag
AT3G18100
See related
Araport:AT3G18100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMYB4R1; myb domain protein 4r1; myb domain protein 4R1
Summary
Member of the R2R3 transcription factor gene family.
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Genomic context

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See MYB4R1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (6200524..6204752)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene B-S glucosidase 44 Neighboring gene nuclear RNA polymerase D2B Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene receptor for activated C kinase 1C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001202993.1
NM_001338329.1
NM_112692.3
NM_180276.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 4r1
NP_001189922.1
  • myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2).
NP_566597.1
  • myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2); Has 22862 Blast hits to 8555 proteins in 571 species: Archae - 0; Bacteria - 1576; Metazoa - 2254; Fungi - 1468; Plants - 12920; Viruses - 9; Other Eukaryotes - 4635 (source: NCBI BLink).
NP_850607.1
  • myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2); Has 21136 Blast hits to 7985 proteins in 535 species: Archae - 0; Bacteria - 6; Metazoa - 2214; Fungi - 1422; Plants - 12869; Viruses - 9; Other Eukaryotes - 4616 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6200524..6204752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202993.1 → NP_001189922.1  myb domain protein 4r1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189922.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XDK9, F4J7J5
    Conserved Domains (4) summary
    smart00717
    Location:447 → 495
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:449 → 493
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:550 → 594
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:501 → 561
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  2. NM_001338329.1 → NP_001327710.1  myb domain protein 4r1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LT55, A0A654F8C1

  3. NM_112692.3 → NP_566597.1  myb domain protein 4r1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566597.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCJ2, A0A384LQA7, A0A654F8C1, Q9LV31
    Conserved Domains (4) summary
    smart00717
    Location:495 → 543
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:497 → 541
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:598 → 642
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:549 → 609
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  4. NM_180276.2 → NP_850607.1  myb domain protein 4r1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850607.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J7J6
    Conserved Domains (3) summary
    smart00717
    Location:282 → 330
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    COG5147
    Location:333 → 429
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam13921
    Location:232 → 293
    Myb_DNA-bind_6; Myb-like DNA-binding domain
Nucleotide Protein
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