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ATP synthase E chain [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821228, updated on 18-Sep-2024

Summary

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Official Full Name
ATP synthase E chain
Primary source
TAIR:AT3G01130
Locus tag
AT3G01130
See related
Araport:AT3G01130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4P13.18; T4P13_18
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (44045..45809, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SNF1 kinase homolog 10 Neighboring gene hypothetical protein 1 Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene ncRNA Neighboring gene myb domain protein 106 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana AUCSIA-1 regulates auxin biology and physically interacts with a kinesin-related protein. Molesini B, et al. PLoS One, 2012. PMID 22911780, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001161112.2
NM_001337318.1
NM_001337319.1
NM_001337321.1
NM_110978.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within auxin polar transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in auxin polar transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to auxin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to auxin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ATP synthase E chain
NP_001154584.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_566131.2
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    44045..45809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337320.1 → NP_001326396.1  ATP synthase E chain [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8S1, A0A384KSC3, B9DH79, Q9MAC4

  2. NM_001337316.1 → NP_001326398.1  ATP synthase E chain [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP56

  3. NM_001337317.1 → NP_001326395.1  ATP synthase E chain [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP52, A0A654F4D6

  4. NM_110978.4 → NP_566131.2  ATP synthase E chain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566131.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8S1, A0A384KSC3, B9DH79, Q9MAC4

  5. NM_001337319.1 → NP_001326397.1  ATP synthase E chain [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP56

  6. NM_001337318.1 → NP_001326394.1  ATP synthase E chain [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP53, Q8LDZ3

  7. NM_001337321.1 → NP_001326393.1  ATP synthase E chain [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP52, A0A654F4D6

  8. NM_001161112.2 → NP_001154584.1  ATP synthase E chain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154584.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J2A7, Q8LDZ3
Nucleotide Protein
Heading Accession and Version

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