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SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821215, updated on 18-Sep-2024

Summary

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Official Full Name
SWIB/MDM2 domain superfamily protein
Primary source
TAIR:AT3G03590
Locus tag
AT3G03590
See related
Araport:AT3G03590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T12J13.13; T12J13_13
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (865122..867008, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosomal protein S2 Neighboring gene ELMO/CED-12 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_111230.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SWIB/MDM2 domain superfamily protein
NP_566210.1
  • SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 1268 Blast hits to 1165 proteins in 257 species: Archae - 0; Bacteria - 219; Metazoa - 186; Fungi - 200; Plants - 424; Viruses - 10; Other Eukaryotes - 229 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    865122..867008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111230.4 → NP_566210.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566210.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8N5, A0A384LAY0, Q8LA28, Q9SS61
    Conserved Domains (1) summary
    pfam02201
    Location:69 → 139
    SWIB; SWIB/MDM2 domain
Nucleotide Protein
Heading Accession and Version

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