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MATE efflux family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821204, updated on 18-Sep-2024

Summary

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Official Full Name
MATE efflux family protein
Primary source
TAIR:AT3G03620
Locus tag
AT3G03620
See related
Araport:AT3G03620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T12J13.10; T12J13_10
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (873749..876800, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ELMO/CED-12 family protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene cysteine synthase 26 Neighboring gene beta glucosidase 25 Neighboring gene Exostosin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001337478.1
NM_111233.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
MATE efflux family protein
NP_187012.2
  • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G17700.1); Has 8317 Blast hits to 8249 proteins in 1758 species: Archae - 126; Bacteria - 5711; Metazoa - 138; Fungi - 320; Plants - 1334; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    873749..876800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111233.4 → NP_187012.2  MATE efflux family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187012.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J158, Q9SS64
    UniProtKB/TrEMBL
    A0A178V6M5, A0A5S9X923, A0A654F5B8, A0A7G2EHV9
    Conserved Domains (1) summary
    cd13132
    Location:37 → 472
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

  2. NM_001337478.1 → NP_001327451.1  MATE efflux family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J158, Q9SS64
    UniProtKB/TrEMBL
    A0A178V6M5, A0A5S9X923, A0A654F5B8, A0A7G2EHV9
    Conserved Domains (1) summary
    cd13132
    Location:37 → 472
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J158.1

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