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plant viral-response family protein (DUF716) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821158, updated on 18-Sep-2024

Summary

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Official Full Name
plant viral-response family protein (DUF716)
Primary source
TAIR:AT3G01360
Locus tag
AT3G01360
See related
Araport:AT3G01360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T13O15.14
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (136399..138799, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene CRM family member 2 Neighboring gene sulfatase and phosphatidylinositolglycan class N domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001035540.3
NM_111002.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
plant viral-response family protein (DUF716)
NP_001030617.1
  • Family of unknown function (DUF716); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_186785.1
  • Family of unknown function (DUF716); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 208 Blast hits to 208 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    136399..138799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111002.2 → NP_186785.1  plant viral-response family protein (DUF716) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186785.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F8A4, Q9SRI3
    Conserved Domains (1) summary
    pfam04819
    Location:125 → 260
    DUF716; Family of unknown function (DUF716)

  2. NM_001035540.3 → NP_001030617.1  plant viral-response family protein (DUF716) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030617.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F8A4, Q9SRI3
    Conserved Domains (1) summary
    pfam04819
    Location:125 → 260
    DUF716; Family of unknown function (DUF716)
Nucleotide Protein
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