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Pectate lyase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821142, updated on 18-Sep-2024

Summary

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Official Full Name
Pectate lyase family protein
Primary source
TAIR:AT3G01270
Locus tag
AT3G01270
See related
Araport:AT3G01270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22N4.10; T22N4_10; T4P13.4; T4P13_4
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (82581..84901, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene splicing regulatory glutamine/lysine-rich-like protein Neighboring gene uncharacterized protein Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene voltage dependent anion channel 1 Neighboring gene SPFH/Band 7/PHB domain-containing membrane-associated protein family Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pectate lyase-like lubricates the male gametophyte's path toward its mating partner. Chebli Y, et al. Plant Physiol, 2023 Dec 30. PMID 37658849
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_110993.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectate lyase family protein
NP_186776.1
  • Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT5G15110.1); Has 1587 Blast hits to 1580 proteins in 266 species: Archae - 0; Bacteria - 700; Metazoa - 0; Fungi - 174; Plants - 701; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    82581..84901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_110993.4 → NP_186776.1  Pectate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186776.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LGC8, Q9SRH4
    UniProtKB/TrEMBL
    A0A178VLQ3, A0A5S9X832, Q08A70
    Conserved Domains (2) summary
    smart00656
    Location:199 → 394
    Amb_all; Amb_all domain
    pfam04431
    Location:29 → 102
    Pec_lyase_N; Pectate lyase, N-terminus
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SRH4.1

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