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proline-rich receptor-like kinase, putative (DUF1421) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821110, updated on 18-Sep-2024

Summary

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Official Full Name
proline-rich receptor-like kinase, putative (DUF1421)
Primary source
TAIR:AT3G01560
Locus tag
AT3G01560
See related
Araport:AT3G01560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4P13.11; F4P13_11
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (219582..221989)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DEAD box RNA helicase 1 Neighboring gene phosphoenolpyruvate (pep)/phosphate translocator 2 Neighboring gene Oleosin family protein Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. Dorone Y, et al. Cell, 2021 Aug 5. PMID 34233164, Free PMC Article
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001337347.1
NM_111022.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endosperm protein body IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
proline-rich receptor-like kinase, putative (DUF1421)
NP_186805.2
  • CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein of unknown function DUF1421 (InterPro:IPR010820), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1); Has 90069 Blast hits to 50370 proteins in 2078 species: Archae - 118; Bacteria - 11979; Metazoa - 33430; Fungi - 17845; Plants - 12302; Viruses - 1904; Other Eukaryotes - 12491 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    219582..221989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111022.3 → NP_186805.2  proline-rich receptor-like kinase, putative (DUF1421) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186805.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J3J5, Q9SS99
    Conserved Domains (3) summary
    pfam07223
    Location:195 → 491
    DUF1421; Protein of unknown function (DUF1421)
    pfam10146
    Location:187 → 285
    zf-C4H2; Zinc finger-containing protein
    cl21463
    Location:458 → 496
    UBA_like_SF; UBA domain-like superfamily

  2. NM_001337347.1 → NP_001326869.1  proline-rich receptor-like kinase, putative (DUF1421) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQK8
Nucleotide Protein
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