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Regulator of chromosome condensation (RCC1) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821100, updated on 18-Sep-2024

Summary

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Official Full Name
Regulator of chromosome condensation (RCC1) family protein
Primary source
TAIR:AT3G02510
Locus tag
AT3G02510
See related
Araport:AT3G02510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16B3.14; F16B3_14
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (521746..524675, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ROTUNDIFOLIA like 19 Neighboring gene mental retardation GTPase activating protein Neighboring gene pseudo Neighboring gene general regulatory factor 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001035546.1
NM_001337414.1
NM_111118.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
Regulator of chromosome condensation (RCC1) family protein
NP_001030623.1
  • Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G16040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_186900.3
  • Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G16040.1); Has 23677 Blast hits to 6532 proteins in 503 species: Archae - 101; Bacteria - 3224; Metazoa - 7700; Fungi - 1627; Plants - 3082; Viruses - 4; Other Eukaryotes - 7939 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    521746..524675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001035546.1 → NP_001030623.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030623.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JC00
    Conserved Domains (2) summary
    pfam00415
    Location:214 → 263
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam13540
    Location:198 → 227
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat

  2. NM_001337414.1 → NP_001326260.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFH0, A0A1I9LNQ7, A0A5S9X8G8

  3. NM_111118.5 → NP_186900.3  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186900.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFH0, A0A5S9X8G8, A0A654F3G4, Q0WSJ9
    Conserved Domains (1) summary
    COG5184
    Location:6 → 387
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
Nucleotide Protein
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