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alanine-tRNA ligase, putative (DUF760) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821048, updated on 18-Sep-2024

Summary

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Official Full Name
alanine-tRNA ligase, putative (DUF760)
Primary source
TAIR:AT3G17800
Locus tag
AT3G17800
See related
Araport:AT3G17800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (6091110..6093151, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Dihydroxyacetone kinase Neighboring gene B-cell receptor-associated-like protein Neighboring gene purple acid phosphatase 17 Neighboring gene ncRNA Neighboring gene pyrimidine 1 Neighboring gene glutamine synthetase 1.3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The role of NADPH oxidase and MAP kinase phosphatase in UV-B-dependent gene expression in Arabidopsis. Kalbina I, et al. Plant Cell Environ, 2006 Sep. PMID 16913867
  2. Gene regulation by low level UV-B radiation: identification by DNA array analysis. Brosché M, et al. Photochem Photobiol Sci, 2002 Sep. PMID 12665302
  3. Ultraviolet-B signalling: Arabidopsis brassinosteroid mutants are defective in UV-B regulated defence gene expression. Sävenstrand H, et al. Plant Physiol Biochem, 2004 Sep. PMID 15474373
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084704.1
NM_112661.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to UV-B IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to UV-B IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to UV-B IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to ozone IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid IDA
Inferred from Direct Assay
more info
  

General protein information

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Preferred Names
alanine-tRNA ligase, putative (DUF760)
NP_001078173.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT1G48450.1); Has 158 Blast hits to 158 proteins in 33 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
NP_566588.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT1G48450.1); Has 157 Blast hits to 157 proteins in 32 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6091110..6093151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112661.3 → NP_566588.1  alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566588.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J6F0, Q0WNF6, Q56ZA5, Q8W4L9, Q9LVJ0
    UniProtKB/TrEMBL
    A0A178V9J5, A0A7G2EJB6
    Conserved Domains (1) summary
    pfam05542
    Location:203 → 274
    DUF760; Protein of unknown function (DUF760)

  2. NM_001084704.1 → NP_001078173.1  alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078173.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V9J5, A0A7G2EJB6
    Conserved Domains (1) summary
    pfam05542
    Location:209 → 280
    DUF760; Protein of unknown function (DUF760)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVJ0.1

Gene LinkOut

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