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BSH transcription regulatory protein SNF5, putative (BSH) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821025, updated on 18-Sep-2024

Summary

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Official Symbol
BSH
Official Full Name
transcription regulatory protein SNF5, putative (BSH)
Primary source
TAIR:AT3G17590
Locus tag
AT3G17590
See related
Araport:AT3G17590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BUSHY; BUSHY GROWTH; CHE1
Summary
Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.
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Genomic context

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See BSH in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (6017166..6019724, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SsrA-binding protein Neighboring gene indole-3-acetic acid inducible 31 Neighboring gene HY5-homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and analysis of the Arabidopsis thaliana BSH gene, a member of the SNF5 gene family. Brzeski J, et al. Nucleic Acids Res, 1999 Jun 1. PMID 10325430, Free PMC Article
  2. AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Sarnowski TJ, et al. Nucleic Acids Res, 2002 Aug 1. PMID 12140326, Free PMC Article
  3. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Sarnowski TJ, et al. Plant Cell, 2005 Sep. PMID 16055636, Free PMC Article
  4. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
  5. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202989.1
NM_112639.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chromatin binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromatin remodeling ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transcription regulatory protein SNF5, putative (BSH)
NP_001189918.1
  • BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939).
NP_566581.1
  • BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939); Has 591 Blast hits to 429 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 262; Plants - 37; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6017166..6019724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338294.1 → NP_001326663.1  transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V9V6, A0A1I9LPZ2

  2. NM_112639.4 → NP_566581.1  transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566581.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P93045, Q9LUN8
    UniProtKB/TrEMBL
    A0A178V9V6, Q2HIG1
    Conserved Domains (1) summary
    pfam04855
    Location:21 → 157
    SNF5; SNF5 / SMARCB1 / INI1

  3. NM_001202989.1 → NP_001189918.1  transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189918.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V9V6, A0A5S9XD22, F4J581
    Conserved Domains (1) summary
    pfam04855
    Location:23 → 159
    SNF5; SNF5 / SMARCB1 / INI1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93045.2

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