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HS1 heat stable protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820980, updated on 18-Sep-2024

Summary

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Official Symbol
HS1
Official Full Name
heat stable protein 1
Primary source
TAIR:AT3G17210
Locus tag
AT3G17210
See related
Araport:AT3G17210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA HEAT STABLE PROTEIN 1; ATHS1; heat stable protein 1
Summary
Encodes a heat stable protein with antimicrobial and antifungal activity.
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Genomic context

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See HS1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (5881919..5883200)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ubiquitin protein ligase 6 Neighboring gene pectin methylesterase inhibitor 2 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a heat-stable protein with antimicrobial activity from Arabidopsis thaliana. Park SC, et al. Biochem Biophys Res Commun, 2007 Oct 26. PMID 17720140
  2. Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana. Bingman CA, et al. Proteins, 2004 Oct 1. PMID 15326607
  3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  4. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The crystal structure of At3g17210 protein is best described as a dimer on a two-fold crystallographic axis.
    Title: Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338278.1
NM_112598.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to bacterium IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within defense response to fungus IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
heat stable protein 1
NP_001319574.1
  • heat stable protein 1 (HS1); INVOLVED IN: defense response to fungus, defense response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: Stress responsive A/B Barrel Domain (TAIR:AT5G22580.1); Has 431 Blast hits to 430 proteins in 120 species: Archae - 0; Bacteria - 167; Metazoa - 0; Fungi - 40; Plants - 173; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5881919..5883200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338278.1 → NP_001319574.1  heat stable protein 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WKU8, Q8LCB1, Q9LUV2
    UniProtKB/TrEMBL
    A0A178VKB6, A0A5S9XD49
    Conserved Domains (1) summary
    pfam07876
    Location:8 → 104
    Dabb; Stress responsive A/B Barrel Domain

  2. NM_112598.4 → NP_566569.1  heat stable protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566569.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WKU8, Q8LCB1, Q9LUV2
    UniProtKB/TrEMBL
    A0A178VKB6, A0A5S9XD49
    Conserved Domains (1) summary
    pfam07876
    Location:8 → 104
    Dabb; Stress responsive A/B Barrel Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LUV2.1

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