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Plant self-incompatibility protein S1 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820953, updated on 18-Sep-2024

Summary

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Official Full Name
Plant self-incompatibility protein S1 family
Primary source
TAIR:AT3G16970
Locus tag
AT3G16970
See related
Araport:AT3G16970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (5793668..5794090, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene calmodulin-binding transcription activator Neighboring gene lipoamide dehydrogenase 1 Neighboring gene plant self-incompatibility protein S1 family protein Neighboring gene heme oxygenase-like, multi-helical Neighboring gene RNA polymerases M/15 Kd subunit Neighboring gene ubiquitin-conjugating enzyme 32

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant self-incompatibility protein S1 family
NP_188322.1
  • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G17080.1); Has 299 Blast hits to 288 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5793668..5794090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112573.1 → NP_188322.1  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188322.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3EB54
    Conserved Domains (1) summary
    pfam05938
    Location:29 → 123
    Self-incomp_S1; Plant self-incompatibility protein S1
Nucleotide Protein
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