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calmodulin-binding transcription activator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820950, updated on 18-Sep-2024

Summary

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Official Full Name
calmodulin-binding transcription activator
Primary source
TAIR:AT3G16940
Locus tag
AT3G16940
See related
Araport:AT3G16940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (5781418..5786310)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene lipoamide dehydrogenase 1 Neighboring gene plant self-incompatibility protein S1 family protein Neighboring gene Plant self-incompatibility protein S1 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6: A Key Regulator of Na(+) Homeostasis during Germination. Shkolnik D, et al. Plant Physiol, 2019 Jun. PMID 30894419, Free PMC Article
  2. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. Yang T, et al. J Biol Chem, 2002 Nov 22. PMID 12218065
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001338268.1
NM_001338269.1
NM_112570.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables calmodulin binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to salt stress IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
calmodulin-binding transcription activator
NP_188319.2
  • calmodulin binding;transcription regulators; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Cell surface receptor IPT/TIG (InterPro:IPR002909), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin binding;transcription regulators (TAIR:AT4G16150.1); Has 5766 Blast hits to 3807 proteins in 309 species: Archae - 13; Bacteria - 199; Metazoa - 3382; Fungi - 247; Plants - 659; Viruses - 23; Other Eukaryotes - 1243 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5781418..5786310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112570.4 → NP_188319.2  calmodulin-binding transcription activator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188319.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VC09, A0A5S9XCU9, A0A654F7Y1
    Conserved Domains (5) summary
    smart01076
    Location:29 → 146
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues
    COG5022
    Location:691 → 836
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:514 → 540
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:306 → 390
    TIG; IPT/TIG domain
    pfam12796
    Location:514 → 604
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_001338268.1 → NP_001327322.1  calmodulin-binding transcription activator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRY6, A0A654F7Y1

  3. NM_001338269.1 → NP_001327323.1  calmodulin-binding transcription activator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRY7, A0A654F7Y1
Nucleotide Protein
Heading Accession and Version

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