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GATA17 GATA transcription factor 17 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820942, updated on 18-Sep-2024

Summary

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Official Symbol
GATA17
Official Full Name
GATA transcription factor 17
Primary source
TAIR:AT3G16870
Locus tag
AT3G16870
See related
Araport:AT3G16870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
GATA transcription factor 17
Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
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Genomic context

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See GATA17 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (5763497..5764760, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene response regulator 1 Neighboring gene COBRA-like protein 8 precursor Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene pentatricopeptide (PPR) domain protein 40

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112563.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GATA transcription factor 17
NP_188312.1
  • GATA transcription factor 17 (GATA17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT4G16141.1); Has 1542 Blast hits to 1508 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 622; Plants - 726; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5763497..5764760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112563.3 → NP_188312.1  GATA transcription factor 17 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188312.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LIB5
    UniProtKB/TrEMBL
    A0A178V8Q8, A0A384L544, A0A7G2ENC1, Q0WPA1
    Conserved Domains (1) summary
    pfam00320
    Location:44 → 78
    GATA; GATA zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LIB5.1

Gene LinkOut

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