F-box and associated interaction domains-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: F-box and associated interaction domains-containing protein
Primary source: TAIR:AT3G16740
Locus tag: AT3G16740
See related: Araport:AT3G16740
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 1

Sequence:: Chromosome: 3; NC_003074.8 (5699310..5700991)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data indicate that the F-box protein (AT3G16740), named as FOA2, with the maturity of the seeds the transcript level of FOA2 increased, whereas gradually decreased during seed imbibition .
Title: F-box gene FOA2 regulates GA- and ABA- mediated seed germination in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_112547.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of seed germination	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: F-box and associated interaction domains-containing protein

NP_566558.1

F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G18780.1); Has 1538 Blast hits to 1469 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1536; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

5699310..5700991

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112547.4 → NP_566558.1 F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566558.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9LUQ9

UniProtKB/TrEMBL

A0A178VFY5, A0A5S9XD56, A0A654F7V4

Conserved Domains (2) summary

pfam07734
Location:209 → 387

FBA_1; F-box associated

pfam00646
Location:4 → 46

F-box; F-box domain