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HEB2 condensin-2 complex subunit H2-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820925, updated on 18-Sep-2024

Summary

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Official Symbol
HEB2
Official Full Name
condensin-2 complex subunit H2-like protein
Primary source
TAIR:AT3G16730
Locus tag
AT3G16730
See related
Araport:AT3G16730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
hypersensitive to excess boron 2
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Genomic context

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See HEB2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (5695321..5699167, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene TOXICOS EN LEVADURA 2 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Condensin II alleviates DNA damage and is essential for tolerance of boron overload stress in Arabidopsis. Sakamoto T, et al. Plant Cell, 2011 Sep. PMID 21917552, Free PMC Article
  2. Characterization and dynamic analysis of Arabidopsis condensin subunits, AtCAP-H and AtCAP-H2. Fujimoto S, et al. Planta, 2005 Oct. PMID 15883832
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_112546.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of DNA repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in condensed chromosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
condensin-2 complex subunit H2-like protein
NP_188295.2
  • CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5695321..5699167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112546.4 → NP_188295.2  condensin-2 complex subunit H2-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188295.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LUR0
    UniProtKB/TrEMBL
    A0A5S9XCT8, A0A654F7W9
    Conserved Domains (3) summary
    pfam06278
    Location:17 → 129
    CNDH2_N; Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
    pfam16858
    Location:303 → 590
    CNDH2_C; Condensin II complex subunit CAP-H2 or CNDH2, C-term
    pfam16869
    Location:153 → 279
    CNDH2_M; PF16858
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LUR0.1

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