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DNA binding / DNA-directed RNA polymerase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820920, updated on 18-Sep-2024

Summary

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Official Full Name
DNA binding / DNA-directed RNA polymerase
Primary source
TAIR:AT3G16680
Locus tag
AT3G16680
See related
Araport:AT3G16680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (5683336..5684278)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene Nodulin MtN3 family protein Neighboring gene Fumarylacetoacetate (FAA) hydrolase family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA binding / DNA-directed RNA polymerase
NP_188290.1
  • DNA binding;DNA-directed RNA polymerases; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G22320.1); Has 450 Blast hits to 450 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 164; Plants - 81; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5683336..5684278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112541.2 → NP_188290.1  DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188290.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XDB2, A0A654F7V0, F4J2R9
    Conserved Domains (1) summary
    cl29798
    Location:1 → 78
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
Nucleotide Protein
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