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JR1 Mannose-binding lectin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820895, updated on 18-Sep-2024

Summary

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Official Symbol
JR1
Official Full Name
Mannose-binding lectin superfamily protein
Primary source
TAIR:AT3G16470
Locus tag
AT3G16470
See related
Araport:AT3G16470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
jacalin-related lectin 35; JAL35; JASMONATE RESPONSIVE 1; T2O4.6
Summary
JA-responsive gene
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Genomic context

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See JR1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (5595282..5599224, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene myrosinase-binding protein-like protein-300B Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene mitochondrial processing peptidase alpha subunit Neighboring gene IQ-domain 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tunicamycin-induced inhibition of protein secretion into culture medium of Arabidopsis T87 suspension cells through mRNA degradation on the endoplasmic reticulum. Iwata Y, et al. Biosci Biotechnol Biochem, 2016 Jun. PMID 26923805
  2. Influx of extracellular Ca2+ involved in jasmonic-acid-induced elevation of [Ca2+]cyt and JR1 expression in Arabidopsis thaliana. Sun QP, et al. J Plant Res, 2006 Jul. PMID 16708291
  3. JACALIN-LECTIN LIKE1 Regulates the Nuclear Accumulation of GLYCINE-RICH RNA-BINDING PROTEIN7, Influencing the RNA Processing of FLOWERING LOCUS C Antisense Transcripts and Flowering Time in Arabidopsis. Xiao J, et al. Plant Physiol, 2015 Nov. PMID 26392261, Free PMC Article
  4. Jasmonic acid-dependent and -independent wound signal transduction pathways are differentially regulated by Ca2+/calmodulin in Arabidopsis thaliana. León J, et al. Mol Gen Genet, 1998 May. PMID 9648747
  5. A downstream mediator in the growth repression limb of the jasmonate pathway. Yan Y, et al. Plant Cell, 2007 Aug. PMID 17675405, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. mRNA destabilization is the major cause of the inhibition of protein secretion in plants.
    Title: Tunicamycin-induced inhibition of protein secretion into culture medium of Arabidopsis T87 suspension cells through mRNA degradation on the endoplasmic reticulum.
  2. The jasmonic acid signalling pathway, including the role of calcium metabolism, in A. thaliana is reported.
    Title: Influx of extracellular Ca2+ involved in jasmonic-acid-induced elevation of [Ca2+]cyt and JR1 expression in Arabidopsis thaliana.
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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001338233.1
NM_112518.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to jasmonic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to jasmonic acid TAS
Traceable Author Statement
more info
  
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to wounding TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in nucleus HDA PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Mannose-binding lectin superfamily protein
NP_001189913.1
  • JASMONATE RESPONSIVE 1 (JR1); INVOLVED IN: response to jasmonic acid stimulus, response to cold, response to wounding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT3G21380.1).
NP_001319568.1
  • JASMONATE RESPONSIVE 1 (JR1); INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, response to cold, response to wounding; LOCATED IN: chloroplast, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_566547.2
  • JASMONATE RESPONSIVE 1 (JR1); INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, response to cold, response to wounding; LOCATED IN: chloroplast, nucleus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 1845 Blast hits to 772 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1837; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5595282..5599224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202984.2 → NP_001189913.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189913.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F7T7, Q8LBW1
    Conserved Domains (2) summary
    PLN02193
    Location:1 → 178
    PLN02193; nitrile-specifier protein
    pfam01419
    Location:163 → 294
    Jacalin; Jacalin-like lectin domain

  2. NM_001338234.1 → NP_001326890.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQM9, Q8LBW1

  3. NM_112518.5 → NP_566547.2  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566547.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J2P0, O04309, Q56Z22
    UniProtKB/TrEMBL
    A0A178VLL2, A0A5S9XCQ9
    Conserved Domains (1) summary
    pfam01419
    Location:317 → 448
    Jacalin; Jacalin-like lectin domain

  4. NM_001338233.1 → NP_001319568.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQM9, Q8LBW1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04309.1

Gene LinkOut

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