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PAB6 poly(A) binding protein 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820885, updated on 18-Sep-2024

Summary

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Official Symbol
PAB6
Official Full Name
poly(A) binding protein 6
Primary source
TAIR:AT3G16380
Locus tag
AT3G16380
See related
Araport:AT3G16380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
poly(A) binding protein 6; T2O4.4
Summary
polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.
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Genomic context

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See PAB6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (5558445..5561126, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene HPT phosphotransmitter 4 Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene nitrile specifier protein 3 Neighboring gene nitrile specifier protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unexpected complexity of poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation. Belostotsky DA. Genetics, 2003 Jan. PMID 12586718, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112509.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables translation initiation factor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA metabolic process TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within translational initiation TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
poly(A) binding protein 6
NP_188259.1
  • poly(A) binding protein 6 (PAB6); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 47895 Blast hits to 20906 proteins in 826 species: Archae - 26; Bacteria - 3385; Metazoa - 25529; Fungi - 5704; Plants - 8252; Viruses - 0; Other Eukaryotes - 4999 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5558445..5561126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112509.2 → NP_188259.1  poly(A) binding protein 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188259.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04319
    UniProtKB/TrEMBL
    A0A5S9XCQ0, A0A7G2EL81
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04319.1

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