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ABCG29 pleiotropic drug resistance 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820881, updated on 18-Sep-2024

Summary

Official Symbol
ABCG29
Official Full Name
pleiotropic drug resistance 1
Primary source
TAIR:AT3G16340
Locus tag
AT3G16340
See related
Araport:AT3G16340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtABCG29; ATP-binding cassette G29; ATPDR1; PDR1; pleiotropic drug resistance 1; PLEIOTROPIC DRUG RESISTANCE 1
Summary
Encodes a p-coumaryl alcohol exporter involved in lignin biosynthesis.
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Genomic context

See ABCG29 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Sequence:
Chromosome: 3; NC_003074.8 (5539385..5546487)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Avr9/Cf-9 rapidly elicited protein Neighboring gene Homeodomain-like superfamily protein Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001202982.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables ATPase-coupled transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
pleiotropic drug resistance 1
NP_001189911.1
  • pleiotropic drug resistance 1 (PDR1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1).
NP_566543.1
  • pleiotropic drug resistance 1 (PDR1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 382062 Blast hits to 287791 proteins in 4008 species: Archae - 7336; Bacteria - 307356; Metazoa - 10132; Fungi - 7268; Plants - 6380; Viruses - 4; Other Eukaryotes - 43586 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5539385..5546487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112505.4NP_566543.1  pleiotropic drug resistance 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566543.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04323, Q94A18
    UniProtKB/TrEMBL
    A0A178VDK2
    Conserved Domains (6) summary
    cd03232
    Location:8111049
    ABCG_PDR_domain2; Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters
    cd03233
    Location:156402
    ABCG_PDR_domain1; First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters
    PLN03140
    Location:11416
    PLN03140; ABC transporter G family member; Provisional
    pfam01061
    Location:11441351
    ABC2_membrane; ABC-2 type transporter
    pfam08370
    Location:716780
    PDR_assoc; Plant PDR ABC transporter associated
    pfam14510
    Location:54141
    ABC_trans_N; ABC-transporter extracellular N-terminal
  2. NM_001202982.2NP_001189911.1  pleiotropic drug resistance 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189911.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VDK2, F4J1I6
    Conserved Domains (6) summary
    cd03232
    Location:8061044
    ABCG_PDR_domain2; Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters
    PLN03140
    Location:11411
    PLN03140; ABC transporter G family member; Provisional
    pfam01061
    Location:11391346
    ABC2_membrane; ABC-2 type transporter
    pfam08370
    Location:711775
    PDR_assoc; Plant PDR ABC transporter associated
    pfam14510
    Location:54141
    ABC_trans_N; ABC-transporter extracellular N-terminal
    cl21455
    Location:156397
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases