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TRZ4 tRNAse Z4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820872, updated on 18-Sep-2024

Summary

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Official Symbol
TRZ4
Official Full Name
tRNAse Z4
Primary source
TAIR:AT3G16260
Locus tag
AT3G16260
See related
Araport:AT3G16260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
tRNAse Z4
Summary
Encodes a tRNase Z.
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Genomic context

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See TRZ4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (5509344..5513245)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene delta tonoplast integral protein Neighboring gene ncRNA Neighboring gene NDH-dependent cyclic electron flow 1 Neighboring gene ncRNA Neighboring gene ENTH/VHS family protein Neighboring gene Integrase-type DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis encodes four tRNase Z enzymes. Canino G, et al. Plant Physiol, 2009 Jul. PMID 19411372, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112497.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3'-tRNA processing endoribonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables 3'-tRNA processing endoribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within tRNA 3'-end processing IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tRNAse Z4
NP_188247.2
  • tRNAse Z4 (TRZ4); FUNCTIONS IN: 3'-tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3'-end processing, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease Z (InterPro:IPR013471); BEST Arabidopsis thaliana protein match is: tRNAse Z3 (TAIR:AT1G52160.1); Has 6299 Blast hits to 4396 proteins in 1654 species: Archae - 442; Bacteria - 4351; Metazoa - 254; Fungi - 243; Plants - 108; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5509344..5513245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338224.1 → NP_001327484.1  tRNAse Z4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSG7, A0A7G2EIP9

  2. NM_001338223.1 → NP_001327485.1  tRNAse Z4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSG8, A0A7G2EIP9

  3. NM_112497.3 → NP_188247.2  tRNAse Z4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188247.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J1H7, Q8GYZ2, Q8LBW8, Q9LU20
    UniProtKB/TrEMBL
    A0A178V7J3, A0A7G2EIP9
    Conserved Domains (5) summary
    COG1234
    Location:130 → 358
    ElaC; Ribonuclease BN, tRNA processing enzyme [Translation, ribosomal structure and biogenesis]
    cd07718
    Location:576 → 829
    RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
    pfam13691
    Location:132 → 188
    Lactamase_B_4; tRNase Z endonuclease
    cl00716
    Location:308 → 349
    tRNA_deacylase; D-aminoacyl-tRNA deacylase
    cl23716
    Location:796 → 866
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J1H7.1

Gene LinkOut

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