U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Putative eukaryotic LigT [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820869, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Putative eukaryotic LigT
Primary source
TAIR:AT3G16230
Locus tag
AT3G16230
See related
Araport:AT3G16230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (5500054..5503573)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Putative eukaryotic LigT Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene delta tonoplast integral protein Neighboring gene ncRNA Neighboring gene NDH-dependent cyclic electron flow 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001202981.1
NM_001338214.1
NM_001338215.1
NM_001338216.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Putative eukaryotic LigT
NP_001189909.1
  • Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).
NP_001189910.1
  • Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).
NP_001319566.1
  • Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1); Has 263 Blast hits to 258 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 13; Plants - 46; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5500054..5503573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338217.1 → NP_001326069.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN58, A0A5S9XD61, A0A654F8R6
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  2. NM_001338219.1 → NP_001326068.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN58, A0A5S9XD61, A0A654F8R6
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  3. NM_001338218.1 → NP_001326070.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN59, A0A5S9XD61, A0A654F8R6
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 378
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  4. NM_001338212.1 → NP_001319566.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJ39, A0A384KSP6, A0A5S9XD61, A0A654F8R6, F4J1H2, F4J1H3
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 444
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  5. NM_001338220.1 → NP_001326071.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN58, A0A5S9XD61, A0A654F8R6
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  6. NM_001338222.1 → NP_001326067.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN58, A0A5S9XD61, A0A654F8R6
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 355
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  7. NM_001338221.1 → NP_001326066.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN59, A0A5S9XD61, A0A654F8R6
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 378
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  8. NM_001338213.1 → NP_001326072.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJ39, A0A384KSP6, A0A5S9XD61, A0A654F8R6, F4J1H2, F4J1H3
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 444
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  9. NM_001202980.2 → NP_001189909.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189909.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJ39, A0A384KSP6, A0A5S9XD61, A0A654F8R6, F4J1H2, F4J1H3
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 444
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  10. NM_001202981.1 → NP_001189910.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189910.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN63, B9DH47
    Conserved Domains (3) summary
    PLN00108
    Location:138 → 404
    PLN00108; unknown protein; Provisional
    pfam10469
    Location:138 → 403
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
    cl00098
    Location:63 → 123
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  11. NM_001338214.1 → NP_001326073.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN59, A0A5S9XD61, A0A654F8R6
    Conserved Domains (2) summary
    cl00098
    Location:105 → 167
    KH-I; K homology (KH) RNA-binding domain, type I
    cl26521
    Location:178 → 378
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  12. NM_001338215.1 → NP_001326074.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN63, B9DH47

  13. NM_001338216.1 → NP_001326075.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LN64, B9DH47
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.