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Putative eukaryotic LigT [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820868, updated on 18-Sep-2024

Summary

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Official Full Name
Putative eukaryotic LigT
Primary source
TAIR:AT3G16220
Locus tag
AT3G16220
See related
Araport:AT3G16220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (5497481..5499474)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene ncRNA Neighboring gene Putative eukaryotic LigT Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene delta tonoplast integral protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112493.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Putative eukaryotic LigT
NP_188243.2
  • Predicted eukaryotic LigT; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Predicted eukaryotic LigT (InterPro:IPR009210), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16230.3); Has 246 Blast hits to 244 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 11; Plants - 39; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5497481..5499474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338211.1 → NP_001326336.1  Putative eukaryotic LigT [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNY9, Q56YB3

  2. NM_112493.4 → NP_188243.2  Putative eukaryotic LigT [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188243.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F7P7, A0A7G2EQP8, Q6NKQ6
    Conserved Domains (1) summary
    PLN00108
    Location:1 → 257
    PLN00108; unknown protein; Provisional
Nucleotide Protein
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