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Dynein light chain type 1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820857, updated on 18-Sep-2024

Summary

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Official Full Name
Dynein light chain type 1 family protein
Primary source
TAIR:AT3G16120
Locus tag
AT3G16120
See related
Araport:AT3G16120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (5464728..5465585)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RAB GTPase homolog G3C Neighboring gene PDI-like 1-6 Neighboring gene uncharacterized protein Neighboring gene RHO guanyl-nucleotide exchange factor 13 Neighboring gene photosystem I subunit H-1 Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338208.1
NM_112482.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Dynein light chain type 1 family protein
NP_188233.1
  • Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.2); Has 1266 Blast hits to 1264 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 103; Plants - 251; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5464728..5465585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112482.3 → NP_188233.1  Dynein light chain type 1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188233.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VDE1, A0A384KD02, A0A7G2EQN5, Q9LW74
    Conserved Domains (1) summary
    pfam01221
    Location:5 → 89
    Dynein_light; Dynein light chain type 1

  2. NM_001338208.1 → NP_001325583.1  Dynein light chain type 1 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VDE1, A0A384KD02, A0A7G2EQN5, Q9LW74
    Conserved Domains (1) summary
    pfam01221
    Location:5 → 89
    Dynein_light; Dynein light chain type 1
Nucleotide Protein
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