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Coatomer, beta' subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820842, updated on 18-Sep-2024

Summary

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Official Full Name
Coatomer, beta' subunit
Primary source
TAIR:AT3G15980
Locus tag
AT3G15980
See related
Araport:AT3G15980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
26
Sequence:
Chromosome: 3; NC_003074.8 (5411278..5418632, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mismatched DNA binding / ATP binding protein Neighboring gene NUP50 (Nucleoporin 50 kDa) protein Neighboring gene ncRNA Neighboring gene sulfate transporter 3;4 Neighboring gene MAR binding filament-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The PII signal transduction protein of Arabidopsis thaliana forms an arginine-regulated complex with plastid N-acetyl glutamate kinase. Chen YM, et al. J Biol Chem, 2006 Mar 3. PMID 16377628
  2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202979.1
NM_112468.3
NM_180261.2
NM_180262.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Coatomer, beta' subunit
NP_001189908.1
  • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1).
NP_001319563.1
  • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1).
NP_188219.2
  • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 77165 Blast hits to 32767 proteins in 824 species: Archae - 72; Bacteria - 8610; Metazoa - 31043; Fungi - 17313; Plants - 9767; Viruses - 3; Other Eukaryotes - 10357 (source: NCBI BLink).
NP_850592.1
  • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 77112 Blast hits to 32696 proteins in 822 species: Archae - 74; Bacteria - 8637; Metazoa - 30981; Fungi - 17314; Plants - 9768; Viruses - 0; Other Eukaryotes - 10338 (source: NCBI BLink).
NP_850593.1
  • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 77165 Blast hits to 32767 proteins in 824 species: Archae - 72; Bacteria - 8610; Metazoa - 31043; Fungi - 17313; Plants - 9767; Viruses - 3; Other Eukaryotes - 10357 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5411278..5418632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338196.1 → NP_001327848.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
    Conserved Domains (3) summary
    cd00200
    Location:17 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:62 → 97
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:319 → 764
    Coatomer_WDAD; Coatomer WD associated region

  2. NM_001338195.1 → NP_001319563.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
    Conserved Domains (3) summary
    cd00200
    Location:17 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:62 → 97
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:319 → 764
    Coatomer_WDAD; Coatomer WD associated region

  3. NM_001338197.1 → NP_001327847.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTK3, A0A654F7N0

  4. NM_001202979.1 → NP_001189908.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189908.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F7N0, F4J1E5
    Conserved Domains (4) summary
    COG2319
    Location:24 → 447
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:17 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:320 → 776
    Coatomer_WDAD; Coatomer WD associated region
    sd00039
    Location:62 → 97
    7WD40; WD40 repeat [structural motif]

  5. NM_180262.2 → NP_850593.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850593.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
    Conserved Domains (3) summary
    cd00200
    Location:17 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:62 → 97
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:319 → 764
    Coatomer_WDAD; Coatomer WD associated region

  6. NM_180261.2 → NP_850592.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850592.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L828, Q9LW87
    UniProtKB/TrEMBL
    A0A654F7N0
    Conserved Domains (4) summary
    COG2319
    Location:24 → 474
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:17 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:320 → 764
    Coatomer_WDAD; Coatomer WD associated region
    sd00039
    Location:62 → 97
    7WD40; WD40 repeat [structural motif]

  7. NM_112468.3 → NP_188219.2  Coatomer, beta' subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188219.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
    Conserved Domains (3) summary
    cd00200
    Location:17 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:62 → 97
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:319 → 764
    Coatomer_WDAD; Coatomer WD associated region
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L828.1

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