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NUP50 (Nucleoporin 50 kDa) protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820841, updated on 18-Sep-2024

Summary

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Official Full Name
NUP50 (Nucleoporin 50 kDa) protein
Primary source
TAIR:AT3G15970
Locus tag
AT3G15970
See related
Araport:AT3G15970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (5408792..5411153, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase-like protein Neighboring gene mismatched DNA binding / ATP binding protein Neighboring gene Coatomer, beta' subunit Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds. Oishi A, et al. J Exp Bot, 2024 Jan 1. PMID 37849222
  2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds.
    Title: Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001338194.1
NM_112467.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NUP50 (Nucleoporin 50 kDa) protein
NP_566532.1
  • NUP50 (Nucleoporin 50 kDa) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), Nuclear pore complex, NUP2/50/61 (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein (TAIR:AT1G52380.1); Has 4078 Blast hits to 2719 proteins in 441 species: Archae - 18; Bacteria - 1103; Metazoa - 1379; Fungi - 710; Plants - 228; Viruses - 8; Other Eukaryotes - 632 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5408792..5411153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112467.3 → NP_566532.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566532.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXC8, Q8LG62, Q9LW88
    UniProtKB/TrEMBL
    A0A7G2EMZ4
    Conserved Domains (2) summary
    cd13169
    Location:326 → 443
    RanBD_NUP50_plant; Ran-binding protein 2, repeat 1
    pfam08911
    Location:13 → 76
    NUP50; NUP50 (Nucleoporin 50 kDa)

  2. NM_001338194.1 → NP_001326913.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXC8, Q8LG62, Q9LW88
    UniProtKB/TrEMBL
    A0A7G2EMZ4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LW88.1

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