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Phox (PX) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820835, updated on 18-Sep-2024

Summary

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Official Full Name
Phox (PX) domain-containing protein
Primary source
TAIR:AT3G15920
Locus tag
AT3G15920
See related
Araport:AT3G15920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (5383595..5390219, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene miscRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of sorting motifs of AtβFruct4 for trafficking from the ER to the vacuole through the Golgi and PVC. Jung C, et al. Traffic, 2011 Dec. PMID 21899678
  2. ENDOSOMAL RAB EFFECTOR WITH PX-DOMAIN, an Interacting Partner of RAB5 GTPases, Regulates Membrane Trafficking to Protein Storage Vacuoles in Arabidopsis. Sakurai HT, et al. Plant Cell, 2016 Jun. PMID 27288222, Free PMC Article
  3. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112462.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Phox (PX) domain-containing protein
NP_188213.1
  • Phox (PX) domain-containing protein; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: Phox (PX) domain-containing protein (TAIR:AT4G32160.1); Has 39660 Blast hits to 24703 proteins in 1619 species: Archae - 570; Bacteria - 4339; Metazoa - 20583; Fungi - 3176; Plants - 1789; Viruses - 109; Other Eukaryotes - 9094 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5383595..5390219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112462.6 → NP_188213.1  Phox (PX) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188213.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q680J3, Q9LSB9
    UniProtKB/TrEMBL
    A0A178VCW0, A0A5S9XCI9, A0A654F7L5
    Conserved Domains (4) summary
    COG1196
    Location:417 → 617
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5391
    Location:147 → 452
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    TIGR02169
    Location:499 → 755
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cl02563
    Location:107 → 220
    PX_domain; The Phox Homology domain, a phosphoinositide binding module
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSB9.1

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